Download the VCFs and their tabix indexes used as inputs for the VCF selector, reference genomes and the metadata.
| Type | VCF | Index (.tbi) |
|---|---|---|
| Full VCF (all positions, ~700 Gb) | All_lyrata_final_allpos.vcf.gz | All_lyrata_final_allpos.vcf.gz.tbi |
| Biallelic SNPs only (~60 Gb) | All_lyrata_final_allpos_bial.vcf.gz | All_lyrata_final_allpos_bial.vcf.gz.tbi |
| Fourfold degenerate sites only (~20 Gb) | All_lyrata_final_allpos_4fds.vcf.gz | All_lyrata_final_allpos_4fds.vcf.gz.tbi |
| Type | VCF | Index (.tbi) |
|---|---|---|
| Full VCF (all positions, ~700 Gb) | arenosa_full.vcf.gz | arenosa_full.vcf.gz.tbi |
| Biallelic SNPs only (~60 Gb) | arenosa_biallelic.vcf.gz | arenosa_biallelic.vcf.gz.tbi |
| Fourfold degenerate sites only (~20 Gb) | arenosa_4folds.vcf.gz | arenosa_4folds.vcf.gz.tbi |
| Type | fasta | Index (.fai) |
|---|---|---|
| Reference genome (~200 Mb) | lyrata_NT1.fasta | lyrata_NT1.fasta.fai |
| Type | fasta | Index (.fai) |
|---|---|---|
| Reference genome (~200 Mb) | arenosa.fasta | arenosa.fasta.fai |
| Type | A. lyrata | A. arenosa |
|---|---|---|
| Sample metadata | lyrata_metadata.tsv | arenosa_metadata.tsv |
| Orthology table | lyrata_orthology.tsv | arenosa_orthology.tsv |
| SNP functional annotation | lyrata_degenotate.bed | arenosa_degenotate.bed |
| Gene annotation (GFF) | lyrata_genes.gff | arenosa_genes.gff |